from internbootcamp.bootcamp.base import Basebootcamp from internbootcamp.libs.chemStructure2Property.ChemStructureGenerator import SMILESGenerator from .utils import last_boxed_only_string, remove_boxed from rdkit import Chem from rdkit.Chem import Crippen from .InChI2logPBootCamp import InChI2logPbootcamp class SMILES2logPbootcamp(InChI2logPbootcamp): def __init__(self,min_len=5, max_len=25, seed=None): # super.__init__() self.min_len = min_len self.max_len = max_len # self.SMILESGenerator = SMILESGenerator(min_len=min_len, max_len=max_len, seed=seed) def case_generator(self) -> str: """ 生成一组数字和目标值。 """ self.SMILESGenerator = SMILESGenerator(min_len=self.min_len, max_len=self.max_len, seed=None) return self.SMILESGenerator.generate_n_valid_smiles(1)[0] def prompt_func(self, SMILES) -> str: instruction = f"Given the SMILES, determine the lipophilicity (logP) value of the material. The SMILES is: {SMILES}" instruction_following = """Let's think step by step and output the final answer within \\boxed{}.The final answer should be one float number. For example "Final Answer: \\boxed{afloat}".""" prompt = instruction + '\n' + instruction_following return prompt @classmethod def _verify_correction(cls, solution, SMILES)->bool: """ Verify the correction of the solution. """ mol = Chem.MolFromSmiles(SMILES) true_logp = Crippen.MolLogP(mol) solution_float = float(solution) if true_logp == 0: return abs(solution_float) <= 0.01 # Just check if solution is close to 0 else: return abs(true_logp - solution_float)/abs(true_logp) <= 0.01